PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG516100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 282aa    MW: 30830.2 Da    PI: 4.7968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG516100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-102052451055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  Pavir.2KG516100.2.p 205 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 245
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.761195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14196261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12200257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-12204249No hitNo description
PfamPF000105.3E-7205245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEADMMAQFL GADYHSFTYE HVDESMEALV ALFLPSLEND SNSSAICLNY DVPPLCWPQP  60
AHSSSVTSLL DPAQNFESFE FPVTNPLPPA DFNSPSDVPY FSDDLSPLHG NHSSSIEEEA  120
ANDAPATKKR KSNATIKASK KTKKAGKKDS VSNEDGTNAY VNAQSSSSCT SEEANLEGNM  180
NSSSKKTGTR ASRGAATDPQ SLYARKRRER INERLRILQN LVPNGTKVDI STMLEEAAQY  240
VKFLQLQIKL LSSDDMWMYA PIAYNGINIS SVDLNISSLQ K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG516100.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959802.21e-178transcription factor bHLH54
TrEMBLA0A1E5UZQ70.0A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRINGPavir.Bb01173.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-39bHLH family protein