PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG516100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 31089.6 Da PI: 4.7968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.7e-10 | 207 | 247 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+A +Y+k Lq Pavir.2KG516100.1.p 207 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 247 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.761 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-14 | 198 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-12 | 202 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.95E-12 | 206 | 251 | No hit | No description |
Pfam | PF00010 | 5.3E-7 | 207 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEADMMAQFL GADYHSFTYE HVDESMEALV ALFLPSLEND SNSSAICLNY DVPPLCWPQP 60 AHSSSVTSLL DPAQNFESFE FPVTNPLPPA DFNSPSDVPY FSDDLSPLHG NHSSSIEEEA 120 ANDAPATKKR KSNATIKMQA SKKTKKAGKK DSVSNEDGTN AYVNAQSSSS CTSEEANLEG 180 NMNSSSKKTG TRASRGAATD PQSLYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAA 240 QYVKFLQLQI KLLSSDDMWM YAPIAYNGIN ISSVDLNISS LQK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG516100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959802.2 | 1e-176 | transcription factor bHLH54 | ||||
Swissprot | Q84WK0 | 1e-49 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | A0A1E5UZQ7 | 1e-180 | A0A1E5UZQ7_9POAL; Transcription factor bHLH84 | ||||
STRING | Pavir.Bb01173.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12496 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 4e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG516100.1.p |
Publications ? help Back to Top | |||
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