PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG510000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25523.6 Da    PI: 6.3136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG510000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-1955108356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++++eq+e Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Pavir.2KG510000.1.p  55 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 108
                          45589***********************************************99 PP
2HD-ZIP_I/II116.31.8e-3755145292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da   ++++Le+ev +L+e+l
  Pavir.2KG510000.1.p  55 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDAAILHKCHLENEVMRLKERL 144
                          9**************************************************************************************998 PP

          HD-ZIP_I/II  92 k 92 
                          +
  Pavir.2KG510000.1.p 145 E 145
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.27750110IPR001356Homeobox domain
SuperFamilySSF466895.59E-1750109IPR009057Homeodomain-like
SMARTSM003894.9E-1753114IPR001356Homeobox domain
CDDcd000861.39E-1555110No hitNo description
Gene3DG3DSA:1.10.10.603.7E-1855108IPR009057Homeodomain-like
PfamPF000462.6E-1655108IPR001356Homeobox domain
PRINTSPR000311.1E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.1E-590106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEQYDELFPP AYVDSSPNLL VPNGTAQGER PRARHRRRRA ARCGGGELDG GGDPKKRRLS  60
DEQVEMLELS FREERKLETG RKVHLAAELG LDPKQVAVWF QNRRARHKSK LLEEEFAKLK  120
QAHDAAILHK CHLENEVMRL KERLEVTEEE LARVRSAAGS HAVSGDGGDA MGRVVCSGSP  180
SSSFSTGTCQ QPCVGGGDHL GDDDLLYVPD YAYADNSVVE WFSLYGIGMM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13657RRRAARCGGGELDGGGDPKKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG510000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399590.0BT039959.1 Zea mays full-length cDNA clone ZM_BFc0054M14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803898.11e-114homeobox-leucine zipper protein HOX14-like
SwissprotQ7XI851e-90HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A3L6T5R81e-114A0A3L6T5R8_PANMI; Homeobox-leucine zipper protein HOX14
STRINGPavir.Bb03217.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-38homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]