PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2KG500900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 163aa MW: 17428.9 Da PI: 7.3414 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 39.9 | 1.5e-12 | 14 | 60 | 6 | 50 |
YABBY 6 sseqvCyvqCnfCntilavsvPsts..lfkvvtvrCGhCtsllsvnl 50 +e++ vqCnfC til+v vP +++v+v+CG C +lsv+l Pavir.2KG500900.1.p 14 LPERLGCVQCNFCATILLVGVPCGGglQLRTVAVQCGSCGGILSVTL 60 5899999***************98622567899************98 PP | |||||||
2 | YABBY | 104.4 | 2.3e-32 | 97 | 159 | 106 | 168 |
YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 e p v++PPe++qr Psayn+fikeei+rika++P+i+h+eafsaa+knWah+P+i Pavir.2KG500900.1.p 97 AAENHAFPAVMKPPERKQRTPSAYNCFIKEEIRRIKATDPNITHKEAFSAASKNWAHLPRIQQ 159 3334445669**************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-40 | 15 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 104 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.4E-5 | 107 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MASSARHPSF VGLLPERLGC VQCNFCATIL LVGVPCGGGL QLRTVAVQCG SCGGILSVTL 60 PPPPPAAYSA ELPPQEPGVD PAPRDSDESS GEDREMAAEN HAFPAVMKPP ERKQRTPSAY 120 NCFIKEEIRR IKATDPNITH KEAFSAASKN WAHLPRIQQK EN* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2KG500900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU963489 | 1e-46 | EU963489.1 Zea mays clone 263245 axial regulator YABBY2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801746.1 | 3e-98 | protein YABBY 7-like | ||||
Swissprot | A2PZN8 | 1e-56 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A2S3H3E8 | 1e-98 | A0A2S3H3E8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EXL6 | 1e-98 | A0A2T7EXL6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb03145.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23420.1 | 6e-33 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2KG500900.1.p |