PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG495000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 459aa    MW: 49110.9 Da    PI: 6.9674
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG495000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.99.2e-111694412374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +++ a+++++ +sP++
  Pavir.2KG495000.1.p  69 LSLLLRCAEAVAMDQLTEARELLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRVAGAFQAYNALSPLV 158
                          689*************************************************************************************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaIl+a++ge+r+H++D+di+qGlQWp L++ LasRp++p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+++
  Pavir.2KG495000.1.p 159 KFSHFTANQAILQALHGEDRLHVVDLDIMQGLQWPGLFHILASRPRKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFHPI 244
                          **********************************************************....9**************************9 PP

                 GRAS 182 ......vakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                                va++ + l +++ + ++ +Ea++V++++  h l+d ++s       +++l++sl+Pk++++veq++ h s++Fl rf+eal+yy
  Pavir.2KG495000.1.p 245 egkighVADAAALLGPRHHHHHHhHEATVVHWMH--HCLYDVTGSDLG----TVRLLRSLRPKLITIVEQDLGH-SGDFLGRFVEALHYY 327
                          666665555555565555555547*********9..888888888888....9*********************.899************ PP

                 GRAS 265 salfdsleak.....lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                          salfd+l  +     +++es er+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+lll +++++gy
  Pavir.2KG495000.1.p 328 SALFDALGDGagagaAAEESAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPATQARLLLGMYSWKGY 416
                          *******6554666677888*************************998887.9************************************* PP

                 GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                          ++ ee+++l lgWkd +L+++SaW+
  Pavir.2KG495000.1.p 417 TLVEEDACLKLGWKDLSLLTASAWE 441
                          ************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.08242421IPR005202Transcription factor GRAS
PfamPF035143.2E-10869441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLQGVLSRAP ASPAAAAMKA KRAPASPDDE DDGEGRPAPG KRQQLLGLGS AAAAAADEEG  60
PETRGLRLLS LLLRCAEAVA MDQLTEAREL LPEIAELASP FGSSPERVAA YFGDALCARV  120
LSSYLGAYSP LALRPLAAAQ SRRVAGAFQA YNALSPLVKF SHFTANQAIL QALHGEDRLH  180
VVDLDIMQGL QWPGLFHILA SRPRKPRSLR ITGLGASLDV LEATGRRLAD FAASLGLPFE  240
FHPIEGKIGH VADAAALLGP RHHHHHHHHE ATVVHWMHHC LYDVTGSDLG TVRLLRSLRP  300
KLITIVEQDL GHSGDFLGRF VEALHYYSAL FDALGDGAGA GAAAEESAER HAVERQLLGA  360
EIRNIVAVGG PKRTGEVRVE RWGDELRRAG FRPVSLAGSP ATQARLLLGM YSWKGYTLVE  420
EDACLKLGWK DLSLLTASAW EPADAAAAPT PRRGSQET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1537444224379Protein SCARECROW
5b3h_D1e-1537444224379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.48540.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG495000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269610.0KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958062.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-170SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A3L6QTZ50.0A0A3L6QTZ5_PANMI; Scarecrow-like protein 23
STRINGSi032551m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-150GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]