PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG494200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 419aa MW: 44184.4 Da PI: 8.7061 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.1 | 3.5e-53 | 32 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk Pavir.2KG494200.1.p 32 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 120 79****************************.88***************8888899*********************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Pavir.2KG494200.1.p 121 PILAYtgSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 160 **998777888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-63 | 28 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.421 | 32 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-28 | 33 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MRSMESTDSS SGSAPPRRRQ QQQKQAGSAP DLPPGFRFHP TDEELVVHYL KKKAASAPLP 60 VAIIAEVDLY KFDPWELPDK ATFGEHEWYF FSPRDRKYPN GARPNRAATS GYWKATGTDK 120 PILAYTGSRE KVGVKKALVF YRGKPPKGLK TNWIMHEYRL ADAPGSATAH RPPPGAGGGK 180 ATSLRLDDWV LCRIYKKTNK LGLGDHQRSL ECEDSVEDAV VAAYHTHAAA PVVAAAGGGG 240 GNYTSLLHHH NGHEDHSFLD GLLTAEDAAG LSAGASSLSH LAAAARAAPS ATKQLLVPSS 300 TPFDWLDTSA LAILPPTKRF HGYSSSRDTT TDGGMSLSSP SDRNHLAAVG AGAVDNGASG 360 GGGGASAIPA FLNPLGVQAA VTYHHHAILG TPVPPEAAAA AACTFQHPYQ LSGVNWNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-71 | 20 | 200 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG494200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085989 | 1e-173 | BT085989.1 Zea mays full-length cDNA clone ZM_BFc0095M07 mRNA, complete cds. | |||
GenBank | BT086467 | 1e-173 | BT086467.1 Zea mays full-length cDNA clone ZM_BFc0169O24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802635.1 | 0.0 | NAC transcription factor NAM-B2-like | ||||
Swissprot | A0SPJ9 | 0.0 | NAM2_HORVV; NAC transcription factor NAM-2 | ||||
TrEMBL | A0A2S3H3E5 | 0.0 | A0A2S3H3E5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J08552.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7572 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 9e-91 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG494200.1.p |
Publications ? help Back to Top | |||
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