PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG484500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 27883.7 Da PI: 7.1635 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.8 | 8.8e-19 | 18 | 97 | 11 | 90 |
FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +raetrt+C+ ++ + +++ +++++v++l leHnH l+ Pavir.2KG484500.1.p 18 GFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKCPRAETRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 97 9*********************************999.999***************9888777***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-14 | 17 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEFNTIDEAG MFWISYGGFE VRKMYTNKRK SDGKVRSCRY VCANEGHRKK DKRDHLTKCP 60 RAETRTDCQV RMGLIMDREK ETYKVADLIL EHNHMLQLPQ TSHLMVSQRK ISELQGFEIE 120 TADDAGIGPK AAHELACVQV GGSSDLSYTL RDHKNYLRAK RQREMAYGQA GSMLMYFQDK 180 IAENPSFQYA LQMDIEEQIA NIFWVDAKML TDYAYFGDVV SFDTTFGTNK ESRPFGVFVG 240 FN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG484500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB108421 | 0.0 | AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence. | |||
GenBank | AC077693 | 0.0 | AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876513.1 | 1e-162 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2S3HDK1 | 1e-176 | A0A2S3HDK1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8KLJ4 | 1e-172 | A0A2T8KLJ4_9POAL; Uncharacterized protein | ||||
STRING | OS10T0571900-00 | 1e-161 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-40 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG484500.1.p |