PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG481600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 457aa    MW: 51621.1 Da    PI: 7.2265
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG481600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1478.6e-15200290190
                 FAR1   1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn Y+ e+GF +r  k+  s         ++ +    ++f+Cs+ g+++ + k+        +++rt+Cka+l++++++d+ w+v + 
  Pavir.2KG481600.1.p 200 EYYNLYSWECGFGIRWGKKWWSekkqrrnksDEMRYQLGQEFYCSCRGSPDASVKT--------SSSRTNCKAMLRLHRTSDHGWVVVEH 281
                          69************9877655444444321112222345799******99998887........99************************ PP

                 FAR1  82 eleHnHela 90 
                           +eHnH+l+
  Pavir.2KG481600.1.p 282 ISEHNHPLS 290
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-12200290IPR004330FAR1 DNA binding domain
PfamPF105514.6E-9412456IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPCSSALTED LEGTVVILGE ESWISGTQVM RVRKIRSALY GNQNKKVEEK SHLSLSDEDR  60
NLSCGPEHLF GSTKNQGKCA PLVDSAGGRN ELSRMQSAAN HDVQRELDII PFDINVRIEG  120
ESAFVQNSGV TSGVISTVGE QDATWKKRNT RCEGPDCRAH VYGRASALQQ AMMKFAGGGS  180
EYVINPSVGT EFDDCDEAYE YYNLYSWECG FGIRWGKKWW SEKKQRRNKS DEMRYQLGQE  240
FYCSCRGSPD ASVKTSSSRT NCKAMLRLHR TSDHGWVVVE HISEHNHPLS TTCGEKKHWP  300
SHHHLDKYTK VLIRMLRGNN IGLTKLYTIL GDFFGSMQNV PATKRSLKTL CHKINHEQAE  360
DDIKKTLDLI CDLRKNDPGF MFSVDTDEGG RIKSLMWTNS RSRMQYEHFG DVVSFDTTFK  420
TNLYDMPFGL FVGVNNHFQT VLLGGVLMTD EKIESF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG481600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181332.11e-112putative protein FAR1-RELATED SEQUENCE 10 isoform X2
TrEMBLA0A453IZX11e-111A0A453IZX1_AEGTS; Uncharacterized protein
STRINGPavir.J32499.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.16e-31FAR1-related sequence 8