PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG470600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 24514.6 Da PI: 4.7903 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.7e-13 | 57 | 103 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ e+ErrRR r+Ns + Lr ++P+ +K+sK ++L A+++Ik+Lq Pavir.2KG470600.1.p 57 KNLEAERRRRGRLNSNILALRAVVPNI-----TKMSKESTLADAIDHIKKLQ 103 56799*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.50E-12 | 53 | 106 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-16 | 53 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.066 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 55 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 56 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-13 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPRRQRARSS EELKAEDFVD SVLNFGGAGG GDEGGEEGEG EAGGADGQPA ATEYKSKNLE 60 AERRRRGRLN SNILALRAVV PNITKMSKES TLADAIDHIK KLQNQVLELQ QQLADSPGEA 120 WEKQGSASCS ESFAAAENMP YQGQVELVPL GPYKYHLKVF CKKAGIFTKV LEALCSYNAQ 180 VTSMSTITFY GYAESVFCIE VKGEQDVVMV ELRSLLSSIV EVPNN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed at the late premeiosis and meiosis stages in both the anther wall and the microspores. After meiosis, expressed in the tapetum, connective tissue, and vascular bundles. {ECO:0000269|PubMed:16141453}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG470600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804464.1 | 1e-143 | transcription factor UDT1-like | ||||
Swissprot | B9FXT3 | 7e-91 | UDT1_ORYSJ; Transcription factor UDT1 | ||||
TrEMBL | A0A3L6T7X1 | 1e-143 | A0A3L6T7X1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Bb02901.1.p | 1e-166 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11982 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG470600.1.p |
Publications ? help Back to Top | |||
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