PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG430400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 214aa MW: 22302.5 Da PI: 11.1222 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.4 | 9.8e-39 | 110 | 186 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C+adl +a++y+rrhkvCe hsk +vlv+gl+qrfCqqCsrfhel efD +krsCrrrL++hn+rrr+++a Pavir.2KG430400.1.p 110 CQVERCAADLHDARRYYRRHKVCEPHSKELAVLVAGLRQRFCQQCSRFHELLEFDGDKRSCRRRLEGHNARRRRSSA 186 **************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-32 | 105 | 171 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.274 | 107 | 184 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.65E-36 | 108 | 188 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-30 | 110 | 183 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MRAKQASKRG SRTAPPPRRL SSIGSSPDGA AMDRKGTSSS AAASMAALAA AAAAGQGQPT 60 SGQANGALSS PHAEEDENPA TAAAVSGGGA SGSSDPVAAR RGAAGGGPSC QVERCAADLH 120 DARRYYRRHK VCEPHSKELA VLVAGLRQRF CQQCSRFHEL LEFDGDKRSC RRRLEGHNAR 180 RRRSSADRHG GSGGDQDGRS HPGNPSRNHF QIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-31 | 104 | 183 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7954 | 0.0 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG430400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096626 | 3e-73 | FP096626.1 Phyllostachys edulis cDNA clone: bphylf027p18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799709.1 | 1e-90 | squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A2S3H2I3 | 8e-89 | A0A2S3H2I3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EWG9 | 3e-89 | A0A2T7EWG9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01146.1.p | 2e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 3e-35 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG430400.1.p |