PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG409300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 202aa MW: 21307.3 Da PI: 5.2621

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG409300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	168.5	8.2e-53	59	162	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdi aa++rt+ Pavir.2KG409300.1.p 59 QLQMFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIGAAIARTE 148 89****99999************************************************************************* PP NF-YC 88 ifdflvdivprdel 101 +fdflvdivprd+ Pavir.2KG409300.1.p 149 VFDFLVDIVPRDDA 162 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.53E-30	58	153	IPR009072	Histone-fold
Pfam	PF00808	8.4E-21	81	144	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	7.9E-36	82	159	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDPTKSSTPP PPPVMGAPVA YPPAAYPPAA AAGAAAYAPQ LYAPPAAAAA QQAAAAQQQL 60 QMFWAEQYRE IEATTDFKNH NLPLARIKKI MKADEDVRMI AAEAPVVFAR ACEMFILELT 120 HRGWAHAEEN KRRTLQKSDI GAAIARTEVF DFLVDIVPRD DAKDADAAAA AAAAAAAAGI 180 PRPAAGVPAT DPLAYYYVPQ Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-56	67	159	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	137	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG409300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100449	0.0	FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957138.1	1e-137	nuclear transcription factor Y subunit C-6
Swissprot	Q9XE33	6e-76	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A368Q2Y8	1e-136	A0A368Q2Y8_SETIT; Uncharacterized protein
STRING	Pavir.Bb02450.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	3e-56	nuclear factor Y, subunit C3

Link Out ? help Back to Top
Phytozome	Pavir.2KG409300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]