PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG401900.6.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 302aa    MW: 32980.5 Da    PI: 6.6044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG401900.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.45.2e-183382255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.2KG401900.6.p 33 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 82
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-2428102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-192999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.8443181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.39E-173386No hitNo description
PfamPF000101.9E-153382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-133787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPHPPSQELT VRVDRKGGSC SDGGTDQRPN TPRSKHSATE QRRRSKINDR FQILRELLPH  60
NDQKRDKATF LLEVIEYIRF LQEKVQKYEA TFPEWNQENA KMLPWSKGQI PGDSLPDPSH  120
FMRNGSSPGS NFTGKLDDNH NMVTSAASGA QNQTENDHMA SVCYRSAETP AIITNNALSQ  180
SQPQWTDLSP VDDCAVNSQM LNNQQLAIDE GTISVSSQYS QELLNSLTHA LQSSGVDLSQ  240
ASISVQINLG KRAVKRPAAG LPSKEPTDPA SSDEIGQQLA MLGGGAEDLS HAAKRHKPGN  300
S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.101121e-165leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG401900.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676940.0BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801928.10.0transcription factor BIM2-like isoform X8
TrEMBLA0A2S3H0H70.0A0A2S3H0H7_9POAL; Uncharacterized protein
STRINGPavir.J04606.1.p0.0(Panicum virgatum)
STRINGSi029604m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-64BES1-interacting Myc-like protein 2