PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG401900.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 338aa    MW: 36909.6 Da    PI: 6.3175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG401900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.26.1e-1856105255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.2KG401900.3.p  56 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 105
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-2451125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.84454104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1954129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-1656109No hitNo description
PfamPF000102.3E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1360110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MESGSRSSGG AGFDDDDGLA ARREVSSSLQ ELTVRVDRKG GSCSDGGTDQ RPNTPRSKHS  60
ATEQRRRSKI NDRFQILREL LPHNDQKRDK ATFLLEVIEY IRFLQEKVQK YEATFPEWNQ  120
ENAKMLPWSN MYFRSFWKNS QSKGQIPGDS LPDPSHFMRN GSSPGSNFTG KLDDNHNMVT  180
SAASGAQNQT ENDHMASVCY RSAETPAIIT NNALSQSQPQ WTDLSPVDDC AVNSQMLNNQ  240
QLAIDEGTIS VSSQYSQELL NSLTHALQSS GVDLSQASIS VQINLGKRAV KRPAAGLPSK  300
EPTDPASSDE IGQQLAMLGG GAEDLSHAAK RHKPGNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.101121e-165leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG401900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9568110.0EU956811.1 Zea mays clone 1574597 transcription factor BIM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801931.10.0transcription factor BIM2-like isoform X11
RefseqXP_025801932.10.0transcription factor BIM2-like isoform X12
TrEMBLA0A2T7ETL50.0A0A2T7ETL5_9POAL; Uncharacterized protein
STRINGPavir.J04606.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-64BES1-interacting Myc-like protein 2