PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG401900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 451aa    MW: 48529.2 Da    PI: 7.7895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG401900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.3e-18169218255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.2KG401900.1.p 169 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 218
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-24164238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19167242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-15169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.20E-17169222No hitNo description
SMARTSM003531.9E-13173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYT AAAASKDAPL QLHDSMPHPP SQGGNFFLKT HNFLQPLEKP  60
GAPPLLPAAA SGAESRHRHP QVPAAAATSK QHALPLPGGV GTFSICPAPV SVAPPATAAV  120
VKAEPPLVLW GQPAAALHQP AARELTVRVD RKGGSCSDGG TDQRPNTPRS KHSATEQRRR  180
SKINDRFQIL RELLPHNDQK RDKATFLLEV IEYIRFLQEK VQKYEATFPE WNQENAKMLP  240
WSNMYFRSFW KNSQSKGQIP GDSLPDPSHF MRNGSSPGSN FTGKLDDNHN MVTSAASGAQ  300
NQTENDHMAS VCYRSAETPA IITNNALSQS QPQWTDLSPV DDCAVNSQML NNQQLAIDEG  360
TISVSSQYSQ ELLNSLTHAL QSSGVDLSQA SISVQINLGK RAVKRPAAGL PSKEPTDPAS  420
SDEIGQQLAM LGGGAEDLSH AAKRHKPGNS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.101121e-165leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG401900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801930.10.0transcription factor BIM2-like isoform X10
TrEMBLA0A1B6QD410.0A0A1B6QD41_SORBI; Uncharacterized protein
STRINGPavir.J04606.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-61BES1-interacting Myc-like protein 2