PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG359100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 393aa    MW: 44588.1 Da    PI: 6.1024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG359100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-11160206147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++ WT+eE+  ++++v+ lG g Wk I++++   Rt+ q+ s+ qky
  Pavir.2KG359100.1.p 160 KQYWTAEEHRDFLHGVNCLGRGAWKFISEYFVPSRTPAQLASHAQKY 206
                          688*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.1013085IPR017877Myb-like domain
SMARTSM00717173487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-10153212IPR009057Homeodomain-like
PROSITE profilePS5129414.374155211IPR017930Myb domain
SuperFamilySSF466897.59E-16156212IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-13158209IPR006447Myb domain, plants
SMARTSM007171.9E-7159209IPR001005SANT/Myb domain
PfamPF002496.1E-9160206IPR001005SANT/Myb domain
CDDcd001674.02E-6163207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MQISAICSDW IGYTLTYYLY NRGKDFLEVM DPKNTQEWTS CEEEEFKAHF AELWYEKSCD  60
RMEALAKRFP AKSIQQLRDK YAEVFADMLC GETDGEPSRD DATVDWDDWC KLLEGETRDL  120
VMDPLVETSL FEPSKQLLFG PAGDQEEIQK SHCKLSRKRK QYWTAEEHRD FLHGVNCLGR  180
GAWKFISEYF VPSRTPAQLA SHAQKYFDRI EKNELDDTRQ RHSINDVRLV NHGMNISGHS  240
CTAPGKGKGI ASSIPPIILT EDIDILPSLA QGMPEFGQAS NSPSNLAEQM THDNHISESF  300
QLEVSGIPSP RVQGSVMLDQ SREENRAYPS RKRSIGAATN RRREKKRMLP GVLTAQTPQA  360
LQFGQGSNGT ANLSYEIVPI KRHNLHQNVP PF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG359100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804405.10.0transcription factor DIVARICATA-like
TrEMBLA0A3L6TDA00.0A0A3L6TDA0_PANMI; Uncharacterized protein
STRINGPavir.Bb02561.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1975668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-20MYB family protein