PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG327500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 378aa MW: 39889.2 Da PI: 6.786 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.2 | 7.4e-40 | 75 | 175 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG++n++k+l+ +++e+ +dam++l+y++eara dPv G+v +i +lq+q+e++ Pavir.2KG327500.1.p 75 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVKNIQKTLRWIDPERGPDAMRALIYQSEARAADPVGGCVTIIEQLQRQIERT 164 7***************************************************************************************** PP DUF260 91 kaelallkeel 101 + ela++k+++ Pavir.2KG327500.1.p 165 ELELAYVKQQI 175 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.292 | 74 | 175 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-37 | 75 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MSSSTSSSKQ PPSLLRLHVD TAAATTTNGS GASPGSSTKS SSRSSRSPRP SASASASAAA 60 TGGPGGGKNP NQNQACAACK YQRRKCNPDC PLAPYFPADQ QRRFLNAHRL FGVKNIQKTL 120 RWIDPERGPD AMRALIYQSE ARAADPVGGC VTIIEQLQRQ IERTELELAY VKQQIAFYRQ 180 AAAVDPLADP AAMILPPAAT ATVAGQDHQD GNAAAVAVGA LYAGQDPVPS GAGLVFHDQQ 240 QGYHHHGLLK VADQQNHPPP QQLYNYFCYD GTPAAGEAST QDGSVQHYGG FADTGGGLKI 300 VSPVVALGEQ LEQQCQLHAF DVKPQGLRAT TERRHGGPAD DLMRPGDHHG DVDQHMEDEP 360 ATAVAAPCHL ELGFSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 69 | 168 | 5 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 69 | 168 | 5 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG327500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005388 | 4e-52 | AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04. | |||
GenBank | AP014964 | 4e-52 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 4e-52 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680048.1 | 4e-93 | LOB domain-containing protein 6-like | ||||
TrEMBL | A0A2S3GZ98 | 1e-164 | A0A2S3GZ98_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J09527.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-39 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG327500.1.p |