PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG326800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 425aa    MW: 47537.8 Da    PI: 7.5499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG326800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06165190126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y +  C +f+  G C +G+ CkFaH+
  Pavir.2KG326800.2.p 165 YQRNVCFDFLNKGKCERGPECKFAHS 190
                          667788899999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.9E-4132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455132160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5136162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-7136160IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4164191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6164192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652165192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-6165191IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4165190IPR000571Zinc finger, CCCH-type
PfamPF046776.3E-36201317IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541978.32E-8208285IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.7E-5209298IPR011146HIT-like domain
PfamPF046761.4E-16350421IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MPNQVLDPHG YDPVVAELVA EIKPRYHIAG TKGVFYSREP YVNDSAAHVT RFIGLANVGN  60
KEKQKFIHAI SPTPASTMSS ADIHAKPPNS TLSPYAAPAQ SVPIEEAPKR PADNTDAQYW  120
RYDVKRQRQG EAEGGRLCFK FTSSGSCPRG SKCNFRHDEE AVEHYQRNVC FDFLNKGKCE  180
RGPECKFAHS LSGDTSIRDS RPRRRVESRC WFCLSSPDVE SHLVISIGEA YYCALAKGPL  240
VPNHVLMIPV EHCPSTLMMP SEAEVELGRY KNALVKYFEK QGKTTVFFEW VSQNSRHANL  300
QAVPVPFPKA DAVNKIFHLA AKKLGFEFSV VNPDGGAKVA RESLISQSES KSNLFYVELP  360
EGKILLHNID SNEKFPAQFG REVLAGLLSM ADRADWRNCK LSKEEEIQMV DDFKHGFREF  420
DPAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U1e-11209397674862CWF19-like protein 2
6id1_U1e-11209397674862CWF19-like protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.17001e-34root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG326800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799608.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3L6QSB40.0A0A3L6QSB4_PANMI; Zinc finger CCCH domain-containing protein 59
STRINGPavir.Bb02057.1.p0.0(Panicum virgatum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]