PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG326800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 606aa    MW: 66404.2 Da    PI: 7.2617
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG326800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06346371126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y +  C +f+  G C +G+ CkFaH+
  Pavir.2KG326800.1.p 346 YQRNVCFDFLNKGKCERGPECKFAHS 371
                          667788899999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.45E-3714239No hitNo description
SMARTSM003564.9E-4313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455313341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5317343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-7317341IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6345373IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4346371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652346373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6346372IPR000571Zinc finger, CCCH-type
PfamPF046771.2E-35382498IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.64E-7389466IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.103.1E-5390479IPR011146HIT-like domain
PfamPF046762.4E-16531602IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAATPPAPAP PRILLAGDAH GRLHQLFKRV KSVNQSTGPF HAMLCVGQLF SPEADAEGAP  60
GDVADYLVGR ATVPIPTYFT GDYGPTAPRL LSKAAAGARG FAPGGIEICP NLFWLRGSNR  120
FTLHGLSVVY LSGKKGPGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP TGVVNGADTS  180
NMPNQVLDPH GYDPVVAELV AEIKPRYHIA GTKGVFYSRE PYVNDSAAHV TRFIGLANVG  240
NKEKQKFIHA ISPTPASTMS SADIHAKPPN STLSPYAAPA QSVPIEEAPK RPADNTDAQY  300
WRYDVKRQRQ GEAEGGRLCF KFTSSGSCPR GSKCNFRHDE EAVEHYQRNV CFDFLNKGKC  360
ERGPECKFAH SLSGDTSIRD SRPRRRVESR CWFCLSSPDV ESHLVISIGE AYYCALAKGP  420
LVPNHVLMIP VEHCPSTLMM PSEAEVELGR YKNALVKYFE KQGKTTVFFE WVSQNSRHAN  480
LQAVPVPFPK ADAVNKIFHL AAKKLGFEFS VVNPDGGAKV ARESLISQSE SKSNLFYVEL  540
PEGKILLHNI DSNEKFPAQF GREVLAGLLS MADRADWRNC KLSKEEEIQM VDDFKHGFRE  600
FDPAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U6e-11390578674862CWF19-like protein 2
6id1_U6e-11390578674862CWF19-like protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.17000.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG326800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799608.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3L6QSB40.0A0A3L6QSB4_PANMI; Zinc finger CCCH domain-containing protein 59
STRINGPavir.Bb02057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]