PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG316400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 385aa    MW: 44224.4 Da    PI: 5.108
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG316400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.5e-08234276145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg+W++ + + ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  Pavir.2KG316400.1.p 234 RGKWSKSDTDVFYQGLRQFGSD-FAMIQQLLP-DKTRQQVRAKFK 276
                          89********************.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.02E-10225282IPR009057Homeodomain-like
PfamPF159633.2E-24227306No hitNo description
Gene3DG3DSA:1.10.10.602.3E-5231280IPR009057Homeodomain-like
PROSITE profilePS512939.022232283IPR017884SANT domain
SMARTSM007178.1E-8233281IPR001005SANT/Myb domain
CDDcd001677.15E-5236277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLGIPGNTQE SLQLRPWEPL DHAVEPPPKS GIGENRSSMK LRSRKKTQKD GTPKHTNDYF  60
DEDCVEPSLV EEDNDSGDDY TAGTNRKVRK KSRDDVEEPQ QQNVQKDKSQ VSSRGHKRTL  120
KDASAEKTEK KLTHRIRQGR AKEVKSLLEI PHDEINPMKL SAAHLRLLQE ARERVNAKEN  180
PSGPSSNTSF QFHDMDGLDY GDEEGRNFDN DRTENHVQNI KKLNYHSYMN KQTRGKWSKS  240
DTDVFYQGLR QFGSDFAMIQ QLLPDKTRQQ VRAKFKTEEK KNPLLVHDAI IHRSGDNLYF  300
KKVIKNLNIE DVAQQEVNNT HKQDGASSER GPEKEDVLDD FIHEEDDSNW LDEEPSIQMP  360
DVQDEHASGN DDDDGDLDDI FDWY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.71480.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG316400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820632.10.0transcription factor TFIIIB component B''-like isoform X2
RefseqXP_025820634.10.0transcription factor TFIIIB component B''-like isoform X4
RefseqXP_025820635.10.0transcription factor TFIIIB component B''-like isoform X5
TrEMBLA0A3L6RTH80.0A0A3L6RTH8_PANMI; Uncharacterized protein
STRINGPavir.Bb01981.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-35MYB_related family protein