PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG313900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 442aa MW: 47265.9 Da PI: 7.8698 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 7.6e-18 | 236 | 291 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+++++t+eq++eLe Fe+ + ++ e++ eLA++lg+ rqV vWFqNrRa++k Pavir.2KG313900.1.p 236 RTKRRLTAEQVRELELSFEEeKLKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 291 77889**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.2 | 9.3e-38 | 237 | 328 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr++ Pavir.2KG313900.1.p 237 TKRRLTAEQVRELELSFEEEKlKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDRLRAAHDELLAGRDALLADNDRLRSQ 326 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 + Pavir.2KG313900.1.p 327 VI 328 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.76E-17 | 228 | 295 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 232 | 293 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-16 | 234 | 297 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-15 | 236 | 291 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.35E-12 | 236 | 294 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 242 | 292 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.0E-6 | 264 | 273 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 268 | 291 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.0E-6 | 273 | 289 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-12 | 293 | 335 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MGFSEIGGAH PQLDPPLLPA VYPVSSQIPS IEDDSPSSGP QPTGSASHQT RGRHRRGQFL 60 RPPCVSSHKT CGGEACCVLP RRRRHGVHAA VPHQVVDARA VEHQLLPPQV PGHRGLLLIR 120 LAPAAGDTPP CFYRSGGGAY IRTPIHLRGA IPRRRRRRRA GVLFGGGGGG GGGGGGFLRG 180 APVVGAAGAA NGWRRGKRPF QLTAAAHEEL QLQLELGDDE LAGFDFELHG GGAQERTKRR 240 LTAEQVRELE LSFEEEKLKL EPERKSELAR RLGIAPRQVA VWFQNRRARW KAKQLEQDFD 300 RLRAAHDELL AGRDALLADN DRLRSQVITL ADKLQAKESS VPAAALQAAP YAPFEQDQLC 360 TETATTAGAA PPAGYDTGGA GDSPEAGARS PPSSSEDDCR GGDGDGGAFY LPDPDTLLAA 420 AAQEDGAQLS TWAWLWNEQQ Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | RRRRRRR |
2 | 285 | 293 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG313900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356850 | 1e-102 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804293.1 | 1e-115 | homeobox-leucine zipper protein HOX25-like | ||||
Swissprot | A3BYC1 | 2e-65 | HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25 | ||||
TrEMBL | A0A2T8KQ94 | 1e-113 | A0A2T8KQ94_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb01926.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12756 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-27 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG313900.1.p |