PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG304600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 353aa    MW: 36342.5 Da    PI: 6.8432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG304600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12252297555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.2KG304600.2.p 252 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 297
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.87E-13245301No hitNo description
SuperFamilySSF474593.66E-17245307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16249306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MQPTTREMQA MAAAGQISLD DLRAAGGVHD DFLDQMLGGL QPSAWPPELA SAAGAKAPGG  60
GAEAEGMHHH HHHHHQQQQF GGGLYDESAL LASRLRQHQI SGGGAESAEA ATKQMVLQQL  120
ADLRHGHHML LQGMGRSTGG GAGGMLLPLS LGSGGSAGDV QALLKAAANS AGGEAGGVFG  180
GAFAGSLQQQ QQQQQHFQPH PQSQQTAPLP GQGFGGGGGA SQPQAGASGG AAAAAPPRQR  240
VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV  300
KVLSMSRLGG AAAVAPLVAD MSSESAGLGT FWKGQQGIDE PAGREDFATT DC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG304600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620760.0BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279380.0KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799597.11e-138glycine, alanine and asparagine-rich protein-like
TrEMBLA0A2T7ESD11e-144A0A2T7ESD1_9POAL; Uncharacterized protein
STRINGPavir.Bb02117.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-21LJRHL1-like 1