PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG299800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 180aa    MW: 20188.1 Da    PI: 11.4196
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG299800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
  Pavir.2KG299800.1.p 14 KGPWTAEEDQKLVSFLLNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding56.56.5e-1868111247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g  ++eE++  ++++++lG++ W++Ia++++ gRt++++k++w+++
  Pavir.2KG299800.1.p  68 GMLSEEEEKTVIELHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                          5669*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.917961IPR017930Myb domain
SuperFamilySSF466897.11E-2811108IPR009057Homeodomain-like
SMARTSM007172.6E-111363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
CDDcd001675.07E-81661No hitNo description
PROSITE profilePS5129427.30162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2665116IPR009057Homeodomain-like
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1668111IPR001005SANT/Myb domain
CDDcd001671.04E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGML SEEEEKTVIE LHAELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPANPQAPP ARSSSSSSGS SRLAGGREDR RHGSHARTRG VLHRRRAHGA PPGRHRVSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG299800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837351e-146BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855211e-146BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856251e-146BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802247.17e-86myb-related protein 315-like
RefseqXP_025802248.17e-86myb-related protein 315-like
RefseqXP_025802249.17e-86myb-related protein 315-like
RefseqXP_025802250.17e-86myb-related protein 315-like
RefseqXP_025802251.17e-86myb-related protein 315-like
RefseqXP_025802252.17e-86myb-related protein 315-like
RefseqXP_025802253.17e-86myb-related protein 315-like
RefseqXP_025802254.17e-86myb-related protein 315-like
RefseqXP_025802255.17e-86myb-related protein 315-like
RefseqXP_025802256.17e-86myb-related protein 315-like
RefseqXP_025802257.17e-86myb-related protein 315-like
RefseqXP_025802258.17e-86myb-related protein 315-like
RefseqXP_025802260.17e-86myb-related protein 315-like
RefseqXP_025802261.17e-86myb-related protein 315-like
RefseqXP_025802262.17e-86myb-related protein 315-like
RefseqXP_025802263.17e-86myb-related protein 315-like
SwissprotQ9C7U75e-81MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2T7ES292e-85A0A2T7ES29_9POAL; Uncharacterized protein
STRINGPavir.Bb01873.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-82myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]