PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG296300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 267aa MW: 28623.6 Da PI: 6.5105

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG296300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113	4.1e-35	101	175	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....e 74 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+ s++++c + Pavir.2KG296300.1.p 101 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEP--SHHQRCvagggD 175 689***********************************************************9..455556443221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	34.922	102	160	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.3E-34	102	184	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MLPYPNPHHF GLSQEPPHPN PTGFPMLPPA AYPDQHYADH HFFPGHSQFN NSETLEAVLR 60 PPRAAPESGG PVVTAAPPPQ GGRNGAAAAG QGHARARKRP FRTDRHSKIR TAQGVRDRRM 120 RLSLDVARDF FALQDRLGFD KASKTVDWLL TQSKPAIDRL TEPSHHQRCV AGGGDAAMSS 180 PTSGAPTNGS GNRRGGVVEK AGARNGGSAF MEHGCELDRL VPAAPVLGEY YYAGGLSEMM 240 SNNGGEGDDE GEYEEDGDDF LDGMQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG296300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804518.1	1e-151	transcription factor TB1-like
TrEMBL	A0A2S3GZP2	1e-150	A0A2S3GZP2_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PDF5	1e-150	A0A3L6PDF5_PANMI; Uncharacterized protein
STRING	Pavir.Bb02154.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	8e-30	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.2KG296300.1.p