PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG296200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 348aa    MW: 36379.5 Da    PI: 6.3926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG296200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14119165354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+e+ErrRR+riN  f++Lr+llP+      +K +Ka+ L ++ +++k+L
  Pavir.2KG296200.1.p 119 RSHSEAERRRRQRINGHFARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 165
                          78*************************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.882116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-14119168No hitNo description
PfamPF000107.7E-12119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14120172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15120172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-14122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.9E-6221269No hitNo description
SuperFamilySSF550213.71E-5221272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMWDGGVEHG SQEAAHQLLP WLGAAPFAEP AVAGFGAMGA YGACDGGVGV AGGLGLGHGG  60
VFGFGFDAVH HHHQQQQQRA AEGSGKQAVV SGLLGSLQAE LGRMTAREMT DAKALAASRS  120
HSEAERRRRQ RINGHFARLR SLLPNTTKTD KASLLAEVLD HVKELKRQTS AMMVAAAAAV  180
AGGGGDDEGD AGPAQMLPTE ADELAVDAAA DRAGRLVVRA SLCCEDRPDL IPDIVRALAA  240
LRMRARRAEI TTLGGRVRSV LLITADEGAE DDHQGYDEDE DDDGRCPNGG HGRAASHRRH  300
ECIASVQEAL RGVMDRRTAS SDTSSSGGGG GSIKRQRVNY GVQEQCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG296200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347905.11e-143uncharacterized protein LOC100279487
TrEMBLA0A3L6QKW91e-155A0A3L6QKW9_PANMI; Uncharacterized protein
STRINGPavir.Bb02155.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-34bHLH family protein