PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG294400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 34159.2 Da PI: 9.4032 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 23 | 155 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP+dee++++yL++kv ++ +++ +i evd++++ePw+Lp k+k +e+ewyfF ++d+ky+tg r+nrat++gyWkatgkdk Pavir.2KG294400.1.p 23 LPPGFRFHPRDEEIITFYLTPKVFQRGFTC-IAIGEVDLNRTEPWELPGKAKMGENEWYFFYQKDRKYPTGMRANRATEAGYWKATGKDK 111 79**************************99.88***************99999************************************* PP NAM 91 evlskkgel.....vglkktLvfykgrapkgektdWvmheyrle 129 e+++ +g + +g+kktLvfykgrap+g kt+Wvmhe+rle Pavir.2KG294400.1.p 112 EIYRVTGGVappviIGMKKTLVFYKGRAPRGAKTNWVMHEFRLE 155 ****9555567778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-60 | 17 | 191 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.65 | 23 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-27 | 24 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MTKGTMGDQQ QPQGMSIGDS LKLPPGFRFH PRDEEIITFY LTPKVFQRGF TCIAIGEVDL 60 NRTEPWELPG KAKMGENEWY FFYQKDRKYP TGMRANRATE AGYWKATGKD KEIYRVTGGV 120 APPVIIGMKK TLVFYKGRAP RGAKTNWVMH EFRLEGNNRL PCPTSSTTST ATLKSSSASK 180 DEWVVCRVFH KTTGIKKVPA PAPSSYDIAM AYAGIDQSSI PMPMPMQYPI LQDFTMDPAV 240 PFYSTTCASS MSVPPMMPPM AGMGSAGLHM NGALFGNPMT NASSVSFFNQ MGMEAEGTSS 300 FLATPESRPS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 20 | 197 | 17 | 174 | NAC domain-containing protein 19 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269|PubMed:17098808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG294400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801540.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLR3 | 4e-75 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2S3GZ79 | 0.0 | A0A2S3GZ79_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02033.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 3e-75 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG294400.1.p |
Publications ? help Back to Top | |||
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