PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG268400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 32453.3 Da PI: 8.049 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl Pavir.2KG268400.1.p 14 KGPWSPEEDSKLKEYIHKNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.9e-12 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ +Ed ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ Pavir.2KG268400.1.p 70 GFSDDEDRIICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.98 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.17E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.88 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-23 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGRAPCCDKS SVKKGPWSPE EDSKLKEYIH KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSDDEDRIIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMHG 120 LQHAYNHHSS KMQQQQLLFL TASSAAPPEA AAGPSSLQHH YSSSGSYGSN NSSTSVLSAA 180 AGSRGLLVNG EHHHIHTTIP SCLDSGGGGG GLGLYLDELC ATTSSSVHGG QGLSAESFVF 240 GGFQQLLEED HHKAALLLAA GAANQLDQQY SAAASSCYDE AKLPLVSLMG GDSGDKGGSY 300 IYID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG268400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310603.1 | 1e-127 | transcription factor RAX2 | ||||
TrEMBL | A0A2S3GXU5 | 1e-160 | A0A2S3GXU5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb01783.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-77 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG268400.1.p |