PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG267500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 226aa MW: 25200.4 Da PI: 6.7618

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG267500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121	6.6e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+k+Cv+apyf+++q +++fa++hk+FGasn +kll +lpe+ r +a+ +++yeA+ r+rdPvyG+v++i++lqq++ + Pavir.2KG267500.1.p 7 PCGACKFLRRKCVKGCVFAPYFCHDQgAAHFAAIHKVFGASNASKLLMHLPENARCEAAVTITYEAQERLRDPVYGCVAHIFALQQKVVT 96 7***********************89********************************************************** PP DUF260 90 lkaelallkee 100 l+a+la+lk + Pavir.2KG267500.1.p 97 LQAQLASLKVQ 107 ***998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.488	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-35	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MTGFGSPCGA CKFLRRKCVK GCVFAPYFCH DQGAAHFAAI HKVFGASNAS KLLMHLPENA 60 RCEAAVTITY EAQERLRDPV YGCVAHIFAL QQKVVTLQAQ LASLKVQASQ GYTNEFFMSG 120 TQQDNIYVNK FMDYQQEEGG MPHPVESCTS VKNESQQYLG SNIMTCTSMQ SHQLHNPHQY 180 RSDSTSSFNT DNDPSCTMFY LNLQEDVQKN GYYCMDNLQS MAPAY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG267500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163832.1	2e-86	LOB domain-containing protein 17-like
TrEMBL	A0A3L6T7F7	1e-154	A0A3L6T7F7_PANMI; Uncharacterized protein
STRING	Pavir.J03376.1.p	1e-170	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-60	lateral organ boundaries-domain 29

Link Out ? help Back to Top
Phytozome	Pavir.2KG267500.1.p