PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG257200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 24560.3 Da PI: 7.0633 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 59 | 101 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Pavir.2KG257200.1.p 59 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 101 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.43E-5 | 45 | 106 | No hit | No description |
PROSITE profile | PS50888 | 15.269 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-16 | 56 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-12 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-16 | 59 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 59 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.27E-4 | 152 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGFLDVIEPK APLGEGGLGV CKVEPGLAEG GGAFGAGAAP PAPASKKKRV EGMPSKNLMA 60 ERRRRKRLND RLSMLRSVVP KISKMDRTSI LGDTIDYMKE LLERIKLLQE EIDEQQQETP 120 GVLSVFRELN PNEMVARNTP KFDVERKESG ETRVEIYCAA KPGLLLSTVS TLENLGLDIQ 180 QCVVSCFNDF GMHASCSEMQ RERISADALK QELFKNAGYG GGCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 66 | KKRVEGMPSKNLMAERRRRKR |
2 | 60 | 67 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8717 | 0.0 | callus| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG257200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042911 | 0.0 | BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds. | |||
GenBank | EU963538 | 0.0 | EU963538.1 Zea mays clone 263876 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812035.1 | 1e-125 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 5e-69 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A3L6S127 | 1e-157 | A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2 | ||||
STRING | Pavir.J18000.1.p | 1e-162 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 5e-68 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG257200.1.p |
Publications ? help Back to Top | |||
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