PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG244000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 504aa    MW: 57786.2 Da    PI: 9.631
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG244000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07294335347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE e+  + v++ G+  Wk  a  +g  +++ ++k+ w+  
  Pavir.2KG244000.1.p 294 KWTQEEYEIVRRFVEKNGTS-WKELATDLG--KSEIHVKDTWRRM 335
                          8*****************99.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-8267348IPR009057Homeodomain-like
PROSITE profilePS512949.742289340IPR017930Myb domain
SMARTSM007170.019291338IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-9294346IPR009057Homeodomain-like
PfamPF139211.8E-9295353No hitNo description
PROSITE profilePS500908.258337405IPR017877Myb-like domain
SMARTSM007170.0019341407IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-8347390IPR009057Homeodomain-like
SuperFamilySSF466893.1E-8385463IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-6391458IPR009057Homeodomain-like
PROSITE profilePS500908.037407460IPR017877Myb-like domain
SMARTSM0071716411462IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MQRGSAAEHS EVKAVTGSNE EKKSQRSKKD KKQRKGKDKD GHGGDGNRSI QSDDKNHSVE  60
MEHAEVSAKM YEKTCPEHAE VIMSERDVKK DRKKKKKNKE VGTISQKQIL DANDGSVGSE  120
YVEMNKGEGE HDSKSNKGKR KHWDGETSSN GSSRDQIVSG GAKKRKRKEP SVTLEEGNEV  180
NMSKMGQNIE GKKKRRKERD NIGVDLSQNT PAGDVKNCNE EKKTSKDDND GGKSGKVNMM  240
KQLGEKGLEM IRASMKHPEL SGCWAEIATS LPHRPQMAIY KRARILLYRS AERKWTQEEY  300
EIVRRFVEKN GTSWKELATD LGKSEIHVKD TWRRMKPKNL KKGSWTQDEY QNLFDLVNLD  360
LRVKAHQKIT PSHRQLRDNI SWEAISEKLT TRSNKDCCLK WYQQLASPLV KEGIWADTDD  420
YLLMEALQKV DAVCVEDVDW ERLLDHRSGE LCRQRWNQMI RMIGGHREKP FIEQVEVLAR  480
RYCPEMLDYR KAESSDLAPN ELT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896KKDRKKKKK
29096DRKKKKK
3162167KKRKRK
4191195KKKRR
5191196KKKRRK
6192196KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19790.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG244000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811599.10.0RNA polymerase I termination factor-like isoform X2
RefseqXP_025811600.10.0RNA polymerase I termination factor-like isoform X2
TrEMBLA0A2S3HM590.0A0A2S3HM59_9POAL; Uncharacterized protein
STRINGPavir.Da01599.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-86MYB_related family protein