PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG209300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 293aa    MW: 32991.5 Da    PI: 5.3064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG209300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.7e-0979125152
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                          s+y+GVr ++ +grW AeIr p     +k+     + t+eeAa+a+ a  ++
  Pavir.2KG209300.1.p  79 SRYRGVRLRE-SGRWQAEIRNPL----TKKREYSLHNTEEEAAAAYQAKWNQ 125
                          79*******9.7*********73....344444689**9******9876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-979129IPR016177DNA-binding domain
PROSITE profilePS5103212.61580136IPR001471AP2/ERF domain
SMARTSM003801.3E-480140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-1180127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MLRSTKMPPM RKVRILCSDP DATDSSGDED DQNPKTEKKI IRVVLVPVKN CKTSKPLKTI  60
MPSGMKDLDG PPERKVSSSR YRGVRLRESG RWQAEIRNPL TKKREYSLHN TEEEAAAAYQ  120
AKWNQFRAEM LAMKAQPPAS KYASLSSLSL VSCVSSLVSC KKKAREAQNR GGSLMEVHCD  180
PIDESSRNFS LKPMEIPQNV MLCLKDEHPI SDSVRPADEL QPDDFTKPED MFRASDFIGA  240
TYKPLDDDDD YIGLPDISHL PLPINDPEFD LDAELDWSGF DFTSMEHELK LL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.188491e-108callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG209300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956541.11e-142ethylene-responsive transcription factor ERF118
RefseqXP_004956542.11e-142ethylene-responsive transcription factor ERF118
RefseqXP_004956543.11e-142ethylene-responsive transcription factor ERF118
RefseqXP_004956544.11e-142ethylene-responsive transcription factor ERF118
RefseqXP_012698904.11e-142ethylene-responsive transcription factor ERF118
RefseqXP_022679546.11e-142ethylene-responsive transcription factor ERF118
TrEMBLA0A3L6T6Z31e-173A0A3L6T6Z3_PANMI; Uncharacterized protein
STRINGPavir.Ba03000.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-12ERF family protein