PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG170000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 474aa    MW: 52103.8 Da    PI: 7.1971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG170000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13315361455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Pavir.2KG170000.1.p 315 SHVLKERRRREKLNERFIALRSLVPFV-----TKMDRASILGDTIEYLKQLR 361
                          79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-81954IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.028311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-11315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17315375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18315385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-13315365No hitNo description
SMARTSM003535.3E-16317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00118418461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
LPGEAVARGG YVRLCGANKT VACIPVNDDG VLEIGTTEKV AEDSGLIQNA RSIFMDQHGI  60
PIVPTLSGHS TSNPSTHINH QPLFQTKMEK YIGGINVQTN NLNLEDEHIE TEDENDRIDS  120
ETNTEINGSR RHLPLDNKGN EQARPNARSS EPMQIETLES LRDGCTNHVD DEISMLMVCQ  180
NAAQDQATLA EIAHYIETVL TILRRNACQR AQAAPNIRTC YLALSKNSSF SSWNRRGTNN  240
DPQRMLISEG SPQRMLKSIV VVILFIGAPA AGYSHQRHRR EVVQPPEPSR DDGGGEGTSR  300
PRTGQGQGQA ELSGSHVLKE RRRREKLNER FIALRSLVPF VTKMDRASIL GDTIEYLKQL  360
RRRIQELESG ARLLRMDGHY LTAPVVPEEK RAHQSASSSA AMAETGSNKV SMIGSEAVVE  420
VRCPRRDGLL LRVMQALHGR ELGLEVTSVQ ASSSAGDVLL VELRAKVNLI AIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13315369862Transcription factor MYC2
5gnj_B3e-13315369862Transcription factor MYC2
5gnj_E3e-13315369862Transcription factor MYC2
5gnj_F3e-13315369862Transcription factor MYC2
5gnj_G3e-13315369862Transcription factor MYC2
5gnj_I3e-13315369862Transcription factor MYC2
5gnj_M3e-13315369862Transcription factor MYC2
5gnj_N3e-13315369862Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324ERRRRE
2320325RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG170000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801359.10.0basic helix-loop-helix protein A
TrEMBLA0A3L6TBW40.0A0A3L6TBW4_PANMI; Uncharacterized protein
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-23bHLH family protein