PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG164800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 124aa MW: 13634.2 Da PI: 5.2567 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.9e-13 | 82 | 123 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksr 43 g+ T +Edel+++++++lG++ W++Ia ++ gRt++++k++ Pavir.2KG164800.1.p 82 GNYTNDEDELIICLHALLGNKyAWSLIAGQLP-GRTDNEIKNY 123 789*****************************.********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.215 | 76 | 123 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-9 | 80 | 122 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-15 | 82 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-11 | 82 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.07E-8 | 83 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MQQAAGPVAG ERLRSAEVLR TKEEDERSSW WLTKEEDERS SWWPTSGRTG KAPGARWPRP 60 PGCCAAARAA AALDELPPPR SGNYTNDEDE LIICLHALLG NKYAWSLIAG QLPGRTDNEI 120 KNY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers (PubMed:24319076, PubMed:25053018). Expressed in pollen grains and mature seeds (PubMed:25053018). Expressed in roots and vasculature of leaves (PubMed:24319076). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG164800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179263.1 | 2e-16 | myb domain protein 7 | ||||
Swissprot | Q42379 | 2e-17 | MYB7_ARATH; Transcription factor MYB7 | ||||
TrEMBL | A0A178VU32 | 3e-15 | A0A178VU32_ARATH; MYB7 | ||||
STRING | Pavir.Bb00907.1.p | 1e-68 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 5e-17 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG164800.1.p |