PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG162000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 299aa    MW: 33057.2 Da    PI: 8.9341
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG162000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.8e-51141391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv +yL+++++g+  ++  +i+evd+y+++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk
  Pavir.2KG162000.1.p  14 LPPGFRFHPTDEELVAHYLCARAAGRGPPV-PIIAEVDLYRFDPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADK 102
                          79*************************999.88***************87778999********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v++  g++ g+kk Lvfy+g+ p+g+kt+W+mheyrl
  Pavir.2KG162000.1.p 103 PVHH-AGRTLGIKKALVFYHGKPPRGVKTEWIMHEYRL 139
                          ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6310165IPR003441NAC domain
PROSITE profilePS5100559.40514165IPR003441NAC domain
PfamPF023652.2E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVAQRRDAEA ELNLPPGFRF HPTDEELVAH YLCARAAGRG PPVPIIAEVD LYRFDPWDLP  60
ERALFGRREW YFFTPRDRKY PNGSRPNRAA GTGYWKATGA DKPVHHAGRT LGIKKALVFY  120
HGKPPRGVKT EWIMHEYRLA DAGAKKPGNG SLRLDDWVLC RLYNKKNEWE KMQQQKGKAM  180
ESEASLSHSH SHSDTRTPES EIDDDTFPVL GLLPEFDDMG PAPALAPAPP APSCPRRRCR  240
TSSTSAATTG SRGSTSTTCR CPGTPTSSTT CSGRRWVLPS RSRTAASCYS EPDGLCSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-9641715174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.451e-132callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG162000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417450.0BT041745.2 Zea mays full-length cDNA clone ZM_BFb0043E11 mRNA, complete cds.
GenBankDQ2442800.0DQ244280.1 Zea mays clone 4143 mRNA sequence.
GenBankHQ8586770.0HQ858677.1 Zea mays clone UT1133 NAC transcription factor mRNA, partial cds.
GenBankKP2835360.0KP283536.1 Zea mays NAC protein (Zma000584) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804128.11e-149NAC domain-containing protein 67-like
SwissprotQ75HE51e-109NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A2S3GWW51e-148A0A2S3GWW5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EMR01e-148A0A2T7EMR0_9POAL; Uncharacterized protein
STRINGPavir.Bb00806.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-81NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]