PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG108200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 351aa    MW: 38842.9 Da    PI: 7.8965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG108200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09296344146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                          r++W++ E++ l+++v+++G+g Wk I    +   + R+  ++k+++++
  Pavir.2KG108200.1.p 296 RKKWSEIEEKTLLEGVEKYGKGYWKDIKMAYPnvfEERSTVDLKDKFRN 344
                          789********************************99**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-10293347IPR009057Homeodomain-like
SuperFamilySSF466898.22E-13294346IPR009057Homeodomain-like
SMARTSM007178.6E-6295348IPR001005SANT/Myb domain
PROSITE profilePS500907.085296346IPR017877Myb-like domain
PfamPF002493.5E-8296345IPR001005SANT/Myb domain
CDDcd116602.87E-19297347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MPHLAAADAF LILEFIAGNR RTPHGILAAL LALLPSSFSP RTSPRLRKAL VLRTLHAALH  60
AEDASCSFTL LGKARRVLAD PNASACFPNQ LSFADNQEDD GARAAAAVAD LKRFLDHEWA  120
NLPPSMLELA ADRLAGHRSL QTWAAADHAN RTKLRLLVGE STEREILAKL MQDASASHPP  180
ILPEVSDNAN DANEADGAQQ NHAAYHSKQS NEADRAQEGM AAHQNVSMKG AQGVQLPEKS  240
VPASNKPSLM ERHPNASIFE WNGLGDYDED RLVGKRKLPP FVRKPHPSPA FAHKMRKKWS  300
EIEEKTLLEG VEKYGKGYWK DIKMAYPNVF EERSTVDLKD KFRNMERHHE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG108200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802240.10.0uncharacterized protein LOC112881664 isoform X1
TrEMBLA0A2S3H5A50.0A0A2S3H5A5_9POAL; Uncharacterized protein
STRINGPavir.Bb03640.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.29e-11TRF-like 3