PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG107100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 256aa    MW: 27734.9 Da    PI: 8.3359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG107100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29e-11135182455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka+ L + ++YI+sLq
  Pavir.2KG107100.1.p 135 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASALDEIINYIQSLQ 182
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-10129186No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17131201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-9137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAASSVAA ELWRPPHHHL ASAPQHKASS VVTAADRGNG GRSGGGSSRR RPRRDAPPEE  60
EPCKLASTSG QDSADPEAKC LKQMTSNESN DKIRTEADTN SGNASKSADK KPAPQEPPKQ  120
DYIHVRARRG QATDSHSLAE RARREKISER MKVLQDLVPG CNKVIGKASA LDEIINYIQS  180
LQCQVEFLSM KLEAVNAHMN NATVSFPSKD FGAPAPPYNT APGLTFDPQT PREYPQALTS  240
DWLHMQIGSA YERVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945GGRSGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.195450.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG107100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955736.11e-125transcription factor BHLH094
SwissprotQ69WS31e-112BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A3L6TDS51e-146A0A3L6TDS5_PANMI; Transcription factor bHLH79-like
STRINGPavir.Bb00642.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-64BIG PETAL P