PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG092000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 152aa MW: 17547.9 Da PI: 10.0709 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 27.2 | 1.2e-08 | 30 | 84 | 28 | 90 |
FAR1 28 itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++f+Cs+ gk+ ++ k+ ++++t+C l ++++ ++ w+v ++eHnH+l+ Pavir.2KG092000.1.p 30 QLGQEFNCSCGGKPGDNLKT--------TSSKTECPTLLWLSRTGNNGWVVVAHVSEHNHALS 84 46789*********999888........899******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-5 | 31 | 84 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGVWFWHTER GKRYSNNRVN RKLPDDERYQ LGQEFNCSCG GKPGDNLKTT SSKTECPTLL 60 WLSRTGNNGW VVVAHVSEHN HALSNSYGEK KQWPSHYHLD KYTKELVRML RENNVGITKL 120 YSILGNFFGS MEKVPTTKRS LKNLCQKINR E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG092000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231466.1 | 5e-42 | uncharacterized protein LOC104582684 isoform X1 | ||||
TrEMBL | A0A3L6PZI2 | 9e-64 | A0A3L6PZI2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Bb01682.1.p | 9e-71 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG092000.1.p |