PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG088100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 26649.1 Da PI: 5.2969 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 102 | 146 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L Pavir.2KG088100.3.p 102 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 146 99***********************7.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.84E-15 | 95 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.77 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-14 | 100 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.86E-10 | 101 | 151 | No hit | No description |
Pfam | PF00010 | 5.4E-6 | 102 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAGQQPPPGG AEDDFLEHFF AFPSAASAGA GGGHAGAGAG AGLHGGDHPF PLALSLDAAA 60 EASAKQDRDP VQLAGLFPPV FGGGVQQPHL RGPPPPQATD PHSIAERLRR ERIAERMRAL 120 QELVPNTNKT DRAAMLDEIL DYVKFLRLQV KVLSMSRLGG AGAVAQLVSD IPLSVKGEAS 180 DSGSTQQIWE KWSTDGTEKQ VTKLMEEDIG AAMQFLQSKA LCMMPISLAM AIYDTQHPQD 240 GHSLKPEPNT SS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2377 | 1e-141 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG088100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096075 | 1e-159 | FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804227.1 | 1e-150 | transcription factor UNE12 | ||||
Swissprot | O22768 | 5e-68 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2S3GW17 | 1e-148 | A0A2S3GW17_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03221.1.p | 1e-157 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 5e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG088100.3.p |
Publications ? help Back to Top | |||
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