PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG081700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 366aa    MW: 41068.6 Da    PI: 4.555
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG081700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35471382102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ ++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g++
  Pavir.2KG081700.1.p  47 FLTKTYDMVDDAATDPIVSWSATNNSFVVWDPHAFATMLLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQR 127
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Pavir.2KG081700.1.p 128 HLLKNIRRRKP 138
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3643136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6343136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDPVLNPVKE ESHGDGGLLP GAAAGDGPSA AAPKPMEGLH DAGPPPFLTK TYDMVDDAAT  60
DPIVSWSATN NSFVVWDPHA FATMLLPRHF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQRHLL KNIRRRKPPT QNASNQQSLG SYLEVGHFGY DAEIDRLKRD KQLLMAEVVK  180
LRQEQQNTNA NLKAMEDRLQ GTDQKQQQMM AFLARVMRNP EFLKHLVSQN EMRKELQDAI  240
SKKRRRRIDQ GPEVDDLGTS SSLEQGSPVL FDPQDSVEFL VDGIPTDLES TAFNGEGLVE  300
PQDIDLGTSE QQQDMPQEDL TDNFWEQLLN EGLGEENDNP VVEDDMNVLS EKMGYLNSDG  360
STSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26141364129Heat shock factor protein 1
5d5v_B1e-26141364129Heat shock factor protein 1
5d5v_D1e-26141364129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246KKRRRR
2242247KRRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.249550.0callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG081700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560060.0BT056006.1 Zea mays full-length cDNA clone ZM_BFc0120E04 mRNA, complete cds.
GenBankEU9567000.0EU956700.1 Zea mays clone 1571069 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4699680.0JX469968.1 Zea mays subsp. mays clone UT3231 HSF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799458.10.0heat stress transcription factor A-2b-like
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2T8KMV50.0A0A2T8KMV5_9POAL; Uncharacterized protein
STRINGSi030256m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-106heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]