PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG066100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 608aa    MW: 64469.2 Da    PI: 4.3629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG066100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.45.3e-29181201100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpa..eqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                          +CaaC++lrr+C+++Cv+ap fpa  ++p++fa+vh++FGasn  ++l+++ ++eer++a+++lv eA ar+rdP   +++ +  lq   
  Pavir.2KG066100.1.p  18 PCAACRTLRRRCVPGCVFAPFFPAegDEPSRFAAVHRVFGASNAARMLEDVeRPEERRRAAETLVEEALARVRDPALDCLSYVAVLQMLN 107
                          7***********************65669**********************66677*******************************999 PP

               DUF260  88 eqlkaelallkee 100
                          e+++++++++++e
  Pavir.2KG066100.1.p 108 EKTREQVDAARAE 120
                          9999999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.01617121IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-3018118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MPEDEAWTAA AQPAVQVPCA ACRTLRRRCV PGCVFAPFFP AEGDEPSRFA AVHRVFGASN  60
AARMLEDVER PEERRRAAET LVEEALARVR DPALDCLSYV AVLQMLNEKT REQVDAARAE  120
IAAEFGPAAA SEPVDLAAAG PEVEMEARAQ AERALAHAEQ DAKMLAARRA VDLKWRQLRQ  180
AARRAAAGRG STSPDTNNQM AGTENTAAAA AGESSSEQTM LTPQAAAVTE LDSPEGNGQS  240
AAAAATNQHR HLAAQHTGVE PGIPEGYRHG QLHDLMAETQ QPTAGAVALA SESAQAPAAA  300
LQHHDSATTQ LAGTGTSTSF LDRHQVAAAG ELSKKLDTMI RRLAAAQQYD DPAAARGYAW  360
MGPDASPRLQ QQPQPQDMAP QMAEEQEEAA AAEIAEAEAA AEQDAMMQLM AAAAPQRDNL  420
AAHYDDDTEF DVTLGYGHRE MHQQAVQQMA AAAKVAQASQ PEMAILLQAA AAQQDPMAQY  480
SETELHISLG LGHPYRLETN TMTVQQPEPN TTSMRQVAGY MDGEHGSDDS GVTVALQLLD  540
SVEAASFRVE QQPPPQGQTA SALGLEMDSS QPPLPPSLGG PHGLVSQQQS DGGDEDQSSD  600
LSVYLFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2791212111LOB family transfactor Ramosa2.1
5ly0_B1e-2791212111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG066100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803413.10.0uncharacterized protein LOC112882549
TrEMBLA0A2T7EKV50.0A0A2T7EKV5_9POAL; Uncharacterized protein
STRINGPavir.Bb00324.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16457913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.45e-19LBD family protein