PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG061400.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 765aa    MW: 82458.8 Da    PI: 6.5812
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG061400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.8e-16450488240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  Pavir.2KG061400.4.p 450 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 488
                          589**********************************96 PP
2TCR50.24.9e-16535574140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ 
  Pavir.2KG061400.4.p 535 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNTF 574
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17449490IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.046450575IPR005172CRC domain
PfamPF036388.6E-12452487IPR005172CRC domain
SMARTSM011143.5E-16535576IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11537573IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MDEYASDSPV FSFINNLSPI EPLKSAYNAN SLQGYQSINI TSISSIFTSP HDNAHKETRL  60
AKSSLGEISE SEACADGSKT NKPAKSSNAV RLFACASTVT RETRTVTCSD AADPPTGPCD  120
LAHPARFDNG SPDHNTTPCH GVRSDLKQDK CRKLDVVQTV KNTVEKRKCL FSTEIQLLDG  180
GQPVNGSDDV LGCQWSDLVS TTSGELLAFD STMDDHHRGM HLAAKNAESC GYLLSKLTGG  240
GEISDRAHPS ASGQVYYQEL VMGEDQTENP QIFQDGQQAI STEEIQDNIY EENGCIPLDY  300
KVESQQRGIR RRCLVFEAAG FSNTVVQKET VESLSVSTCK GKSHVQTQPR GLRGIGLHLN  360
ALALTPKGKM ANQDPMASGL HPSSGSEKDA HGKFLSAGEN FPNSGGDLLE FPMDDCSAGS  420
FPVNDHVSSQ SVSPQKKRRK TDNNGDDGEA CKRCSCKKSK CLKLYCECFA AGVYCSEPCS  480
CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDAG PETGEDPNST PASARHKRGC  540
NCKKSSCLKK YCECYQGGVG CSSNCRCESC KNTFGRRDAD TELTEELKQE GEQTENCGKE  600
KENDQQKANV QNEDHPLLEL VPITPPFDLS SSLLKLPNFS SAKPPRPSKA RSGNSRSSAS  660
KATATLQSSK SSKVDGSVID EEMPDILKEA DSPNNCVKST SPNGKRVSPP HNALSISPNR  720
KGGRKLILKS IPSFPSLMGE SNSGSTMNDT DNTFSTSPLV LGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1545257212120Protein lin-54 homolog
5fd3_B3e-1545257212120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435439KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139120.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG061400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799594.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2S3GWC50.0A0A2S3GWC5_9POAL; Uncharacterized protein
STRINGPavir.Bb00411.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-87TESMIN/TSO1-like CXC 2