PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG061400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 763aa    MW: 82300.7 Da    PI: 6.5812
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG061400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.8e-16448486240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  Pavir.2KG061400.3.p 448 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 486
                          589**********************************96 PP
2TCR50.34.9e-16533572140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ 
  Pavir.2KG061400.3.p 533 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNTF 572
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17447488IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.046448573IPR005172CRC domain
PfamPF036388.6E-12450485IPR005172CRC domain
SMARTSM011143.5E-16533574IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11535571IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDEYDSPVFS FINNLSPIEP LKSAYNANSL QGYQSINITS ISSIFTSPHD NAHKETRLAK  60
SSLGEISESE ACADGSKTNK PAKSSNAVRL FACASTVTRE TRTVTCSDAA DPPTGPCDLA  120
HPARFDNGSP DHNTTPCHGV RSDLKQDKCR KLDVVQTVKN TVEKRKCLFS TEIQLLDGGQ  180
PVNGSDDVLG CQWSDLVSTT SGELLAFDST MDDHHRGMHL AAKNAESCGY LLSKLTGGGE  240
ISDRAHPSAS GQVYYQELVM GEDQTENPQI FQDGQQAIST EEIQDNIYEE NGCIPLDYKV  300
ESQQRGIRRR CLVFEAAGFS NTVVQKETVE SLSVSTCKGK SHVQTQPRGL RGIGLHLNAL  360
ALTPKGKMAN QDPMASGLHP SSGSEKDAHG KFLSAGENFP NSGGDLLEFP MDDCSAGSFP  420
VNDHVSSQSV SPQKKRRKTD NNGDDGEACK RCSCKKSKCL KLYCECFAAG VYCSEPCSCQ  480
GCLNKPIHEE IVLSTRKQIE FRNPLAFAPK VIRMSDAGPE TGEDPNSTPA SARHKRGCNC  540
KKSSCLKKYC ECYQGGVGCS SNCRCESCKN TFGRRDADTE LTEELKQEGE QTENCGKEKE  600
NDQQKANVQN EDHPLLELVP ITPPFDLSSS LLKLPNFSSA KPPRPSKARS GNSRSSASKA  660
TATLQSSKSS KVDGSVIDEE MPDILKEADS PNNCVKSTSP NGKRVSPPHN ALSISPNRKG  720
GRKLILKSIP SFPSLMGESN SGSTMNDTDN TFSTSPLVLG PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1545057012120Protein lin-54 homolog
5fd3_B3e-1545057012120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433437KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139120.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG061400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799594.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2S3GWC50.0A0A2S3GWC5_9POAL; Uncharacterized protein
STRINGPavir.Bb00411.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-87TESMIN/TSO1-like CXC 2