PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG061400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 553aa    MW: 59715.7 Da    PI: 7.187
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG061400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.2e-16238276240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  Pavir.2KG061400.2.p 238 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 276
                          589**********************************96 PP
2TCR50.83.3e-16323362140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ 
  Pavir.2KG061400.2.p 323 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNTF 362
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17237278IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.046238363IPR005172CRC domain
PfamPF036385.8E-12240275IPR005172CRC domain
SMARTSM011143.5E-16323364IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.1E-12325361IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MDDHHRGMHL AAKNAESCGY LLSKLTGGGE ISDRAHPSAS GQVYYQELVM GEDQTENPQI  60
FQDGQQAIST EEIQDNIYEE NGCIPLDYKV ESQQRGIRRR CLVFEAAGFS NTVVQKETVE  120
SLSVSTCKGK SHVQTQPRGL RGIGLHLNAL ALTPKGKMAN QDPMASGLHP SSGSEKDAHG  180
KFLSAGENFP NSGGDLLEFP MDDCSAGSFP VNDHVSSQSV SPQKKRRKTD NNGDDGEACK  240
RCSCKKSKCL KLYCECFAAG VYCSEPCSCQ GCLNKPIHEE IVLSTRKQIE FRNPLAFAPK  300
VIRMSDAGPE TGEDPNSTPA SARHKRGCNC KKSSCLKKYC ECYQGGVGCS SNCRCESCKN  360
TFGRRDADTE LTEELKQEGE QTENCGKEKE NDQQKANVQN EDHPLLELVP ITPPFDLSSS  420
LLKLPNFSSA KPPRPSKARS GNSRSSASKA TATLQSSKSS KVDGSVIDEE MPDILKEADS  480
PNNCVKSTSP NGKRVSPPHN ALSISPNRKG GRKLILKSIP SFPSLMGESN SGSTMNDTDN  540
TFSTSPLVLG PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1524036012120Protein lin-54 homolog
5fd3_B2e-1524036012120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139120.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG061400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799594.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2S3GWC50.0A0A2S3GWC5_9POAL; Uncharacterized protein
STRINGPavir.Bb00411.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.16e-89TESMIN/TSO1-like CXC 2