PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG048300.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 521aa MW: 55321.3 Da PI: 9.4453 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.8 | 4e-18 | 330 | 376 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq Pavir.2KG048300.6.p 330 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 376 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.07E-18 | 321 | 380 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-21 | 324 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.743 | 326 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-22 | 330 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-15 | 330 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-18 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MSTPPPLHTN AGGRLSLSLS QTDAAPHGLF LRSLNLGGRT ERERARIQPL VGRSIAGGIL 60 VLSRSYAQVA ELFYKKSSAV GGTSARPGPR SGYSPWTAAR GRRRPRRDPS RNQSFLLPLL 120 HCFLAARLVF LIRSSFAPFH SARRSPDGEL VELLWQDGAV VAHSQAAQRA VAGAGNTGAS 180 GVTGEAAAWL PGGGALGGDV YSQLWQSIAQ ADGRVGARPP ARSGNSAAGS SRTAGEVGSS 240 FCGSNLVAAA RHLDDDIDDV AALPPPPPPG DEPGACGGAS TSSGWNSNAL LKRSRDELDF 300 RSEDADLDTV DETPASRRPA SKRRTRAAEV HNMSERRRRD RINEKMRALQ ELVPHCNKTD 360 KASILDEAIE YLKSLQMQVQ IMWMSTGMAP MMLPGAHQLM PPMSMGLNSA YMPPAAQFLS 420 QIQTVPPFLS NPLPNQIPQI SPASTSAPNV TNQVQSNRMA QPRNPFLHPN DALTSTPQLP 480 SLFGYGPQMA QENAIQELLA CTAAPALDAE QLSSSDGTGT * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 321 | 338 | KRRTRAAEVHNMSERRRR |
2 | 334 | 339 | ERRRRD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG048300.6.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804058.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2 | ||||
Swissprot | Q10CH5 | 2e-99 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A2T7EKQ1 | 0.0 | A0A2T7EKQ1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00256.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-32 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG048300.6.p |
Publications ? help Back to Top | |||
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