PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG048300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 392aa MW: 41231 Da PI: 4.9484 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57.3 | 2.7e-18 | 201 | 247 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq Pavir.2KG048300.3.p 201 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 247 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.67E-19 | 192 | 251 | No hit | No description |
SuperFamily | SSF47459 | 9.55E-22 | 195 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.743 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-22 | 201 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-15 | 201 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-18 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MDGGERPAAT QKRPFPPDGE LVELLWQDGA VVAHSQAAQR AVAGAGNTGA SGVTGEAAAW 60 LPGGGALGGD VYSQLWQSIA QADGRVGARP PARSGNSAAG SSRTAGEVGS SFCGSNLVAA 120 ARHLDDDIDD VAALPPPPPP GDEPGACGGA STSSGWNSNA LLKRSRDELD FRSEDADLDT 180 VDETPASRRP ASKRRTRAAE VHNMSERRRR DRINEKMRAL QELVPHCNKT DKASILDEAI 240 EYLKSLQMQV QIMWMSTGMA PMMLPGAHQL MPPMSMGLNS AYMPPAAQFL SQIQTVPPFL 300 SNPLPNQIPQ ISPASTSAPN VTNQVQSNRM AQPRNPFLHP NDALTSTPQL PSLFGYGPQM 360 AQENAIQELL ACTAAPALDA EQLSSSDGTG T* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 209 | KRRTRAAEVHNMSERRRR |
2 | 205 | 210 | ERRRRD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG048300.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804058.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2 | ||||
Swissprot | Q10CH5 | 1e-101 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A2T7EKQ1 | 0.0 | A0A2T7EKQ1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00256.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-33 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG048300.3.p |
Publications ? help Back to Top | |||
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