PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG002700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 364aa    MW: 38417 Da    PI: 8.3351
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG002700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.8e-28241295156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r+ W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQ YRl+
  Pavir.2KG002700.2.p 241 KARRTWSPELHRQFVAALNQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQ-YRLH 295
                          68************************************************9.8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.823238298IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-26239298IPR009057Homeodomain-like
SuperFamilySSF466891.79E-13239293IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-21241295IPR006447Myb domain, plants
PfamPF002491.3E-5243292IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGLDVLEIGM GSDLSLDLRH FASKAVRQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL  60
CARLLAEVID VMKAEAGTKT KSDRKAAEED GAAGDKSKWM STAQLWTGDS GREDAASEKQ  120
DKGRSSPEAR SPSGGGGGAF LPFKAVGSGA PAFAPLCLRA DDKAADAGTP DLSLLSPPAI  180
KSAPAAAAGA AQESRRQVVG FAQAAARAVA MAPAGPSLSL QSQPQQTSQQ QQQQQQQAAR  240
KARRTWSPEL HRQFVAALNQ LGGAQVATPK QIRELMKVDG LTNDEVKSHL QYRLHNRRAP  300
GSAVVSQPIV LVGGLWIPQE QSSSQSGSPQ GPLHFSTSGI AVSSAATVSC EEEDGRSESY  360
GWK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.6140.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG002700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804519.10.0transcription factor NIGTH1-like
TrEMBLA0A2T7EKE50.0A0A2T7EKE5_9POAL; Uncharacterized protein
TrEMBLA0A2T8KMG40.0A0A2T8KMG4_9POAL; Uncharacterized protein
STRINGPavir.Ba02240.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-30G2-like family protein