PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG002700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 365aa    MW: 38545.2 Da    PI: 8.6379
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG002700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-31241296156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r+ W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pavir.2KG002700.1.p 241 KARRTWSPELHRQFVAALNQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 296
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.232238298IPR017930Myb domain
SuperFamilySSF466898.6E-17239299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28239299IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-25241296IPR006447Myb domain, plants
PfamPF002494.3E-7243294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGLDVLEIGM GSDLSLDLRH FASKAVRQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL  60
CARLLAEVID VMKAEAGTKT KSDRKAAEED GAAGDKSKWM STAQLWTGDS GREDAASEKQ  120
DKGRSSPEAR SPSGGGGGAF LPFKAVGSGA PAFAPLCLRA DDKAADAGTP DLSLLSPPAI  180
KSAPAAAAGA AQESRRQVVG FAQAAARAVA MAPAGPSLSL QSQPQQTSQQ QQQQQQQAAR  240
KARRTWSPEL HRQFVAALNQ LGGAQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHNRRA  300
PGSAVVSQPI VLVGGLWIPQ EQSSSQSGSP QGPLHFSTSG IAVSSAATVS CEEEDGRSES  360
YGWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-15241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-15241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-15241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-15241294154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.6140.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG002700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804519.10.0transcription factor NIGTH1-like
TrEMBLA0A2T7EKE50.0A0A2T7EKE5_9POAL; Uncharacterized protein
TrEMBLA0A2T8KMG40.0A0A2T8KMG4_9POAL; Uncharacterized protein
STRINGPavir.Ba02240.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-32G2-like family protein