PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG565200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 173aa    MW: 18623.9 Da    PI: 8.3331
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG565200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.31.1e-1597152560
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                          ++ +r++kNRe+A rsR+RK+a+++eLe++v  L +eN +Lk + ++l+ e+a+l 
  Pavir.1NG565200.1.p  97 RKNIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRQCKQLQVEMAALI 152
                          6889***********************************99999999999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-1692152No hitNo description
SMARTSM003388.8E-1593157IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.59995151IPR004827Basic-leucine zipper domain
PfamPF001701.2E-1297151IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-1297152No hitNo description
CDDcd147073.44E-1797151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MPRSPQLSLS GCSSLFSLSS TSTSRDNDSA AAAPVPPPPP SLHPLPPGRP LLSLSVGGGG  60
EEEQEDEEEY LLGGLDLQLT GAGGSNSSGC CDGDDERKNI RMMKNRESAL RSRARKRAYV  120
QELEKEVRRL VNENLKLKRQ CKQLQVEMAA LIQPSSSRSN PHIRRAASST QL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.101710.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG565200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812916.13e-65bZIP transcription factor 27-like
RefseqXP_025812921.13e-65bZIP transcription factor 27-like
RefseqXP_025812927.13e-65bZIP transcription factor 27-like
TrEMBLA0A2T7FEE29e-72A0A2T7FEE2_9POAL; Uncharacterized protein
STRINGPavir.J00689.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40173072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.14e-13bZIP family protein