PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG554000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 227aa MW: 25978.6 Da PI: 11.9813 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 81 | 120 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d +l ++ +++G ++W+++a++mg gR+ +c+ rw+ +l Pavir.1NG554000.1.p 81 DARLERLAREHGFRHWRRVAARMGSGRSSRECRGRWRHHL 120 57999*******************************9886 PP | |||||||
2 | Myb_DNA-binding | 23.8 | 1.1e-07 | 128 | 171 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l+++ ++Gg+ W+ +r +g gRt + rw+ ++ Pavir.1NG554000.1.p 128 PFTARDDDDLARLYVRHGGR-WRDMSRAVG-GRTSRVMRRRWREFR 171 79******************.*********.***********9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.199 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 0.025 | 81 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-8 | 81 | 119 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.53E-15 | 81 | 167 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 81 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.76E-7 | 81 | 120 | No hit | No description |
SMART | SM00717 | 0.0012 | 125 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00164 | 128 | 170 | No hit | No description |
PROSITE profile | PS50090 | 6.864 | 128 | 171 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-8 | 132 | 169 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MRSREEGSTL YIAGAASLRS CMPYPQPRAG QVVALWGRRA RFKDDKQASV RASTCHVVRH 60 RRPGGIGDAA CPPHPAAAGV DARLERLARE HGFRHWRRVA ARMGSGRSSR ECRGRWRHHL 120 ARHVYHRPFT ARDDDDLARL YVRHGGRWRD MSRAVGGRTS RVMRRRWREF RDSDAFLSKL 180 WKPVTVSTEP SSQQQQQQQH LRLGQCCLLL DTDALLVASF RNLLIQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG554000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821894.1 | 2e-68 | transcription factor MYB73-like | ||||
TrEMBL | A0A2T7F816 | 3e-67 | A0A2T7F816_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27942.1.p | 1e-159 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 9e-09 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG554000.1.p |