PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG550900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 345aa    MW: 35829.7 Da    PI: 8.4922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG550900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058149171123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+k+F++   L  H  +H
  Pavir.1NG550900.1.p 149 YECKTCNKCFPTFQALGGHRASH 171
                          99**********99999998887 PP
2zf-C2H211.60.00083245267123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F +   L  H+r+H
  Pavir.1NG550900.1.p 245 HECSICGAEFASGQALGGHMRRH 267
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-11148173IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-9148171No hitNo description
SMARTSM003550.094149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097149176IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-9240267No hitNo description
PfamPF139121.5E-12244268IPR007087Zinc finger, C2H2
SMARTSM003550.016245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64245272IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MHTPEAVEIA KPPPLVVMPT SSTEHSAGEL DRHQQPPLSA AVKRKRTKRP RHHPPASSAS  60
SSESTTTEEE DMAHCLILLA QGAAGGSGSG VAVDSKPSPS PPAAQQQAPQ PSPPAAAPPP  120
LVKSERYTSR KYTEAATTVD GVKAGFYVYE CKTCNKCFPT FQALGGHRAS HKKPRLAGAD  180
DEIAINVVTA SKTAIKQQQR PPMATASPPP ALQPPQMDVA VFPDVTTALS LNSVAAIRSS  240
KLRVHECSIC GAEFASGQAL GGHMRRHRPL NAPERAVTAI AGTDTKKEGS ASINLELDLN  300
LPAPSDGEAV VSLPAAVVLG LGPLSDGKKA GLMLTASALV DCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG550900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039894e-67AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040264e-67AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149584e-67AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-67CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-176zinc finger protein ZAT5-like
TrEMBLA0A2S3GUR41e-175A0A2S3GUR4_9POAL; Uncharacterized protein
TrEMBLA0A3L6RPR91e-174A0A3L6RPR9_PANMI; Zinc finger protein ZAT5
STRINGPavir.Aa00068.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-44C2H2 family protein