PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG547900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 221aa MW: 22500.3 Da PI: 10.7658 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.1 | 7.6e-39 | 31 | 123 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg. 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++s ++ + Pavir.1NG547900.1.p 31 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSTSS-QTTPf 119 789*************************************************************99999888533333333333.22224 PP TCP 89 ...k 89 k Pavir.1NG547900.1.p 120 vlgK 123 4441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.1E-33 | 37 | 123 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTTRPADGGA AAAAAAADKQ LVPASNGNAL AVRKAPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR STSSQTTPFV 120 LGKRVRNDAD AEPTVAAPAP GFWALPARAD FGQLWSFAAA PEMMVAAAAA AAPAMAGEAS 180 AARVGNYLPM AQGNLNLLAS FSGGSAPTAT AGRAEEESAR * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6609 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG547900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 1e-118 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 1e-118 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 1e-118 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-118 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814152.1 | 1e-113 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 1e-75 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2T7FE71 | 1e-111 | A0A2T7FE71_9POAL; Uncharacterized protein | ||||
STRING | OMERI02G35320.1 | 1e-91 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-47 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG547900.1.p |